List of sequenced prokaryotic genomes

This list of sequenced eubacterial genomes contains all the eubacteria

Bacteria

Bacteria are a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals...

known to have publicly-available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration

International Nucleotide Sequence Database Collaboration

The International Nucleotide Sequence Database Collaboration consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. It involves the following computerized databases: DNA Data Bank of Japan , GenBank and the EMBL...

, a public database which can be searched on the web

World Wide Web

The World Wide Web is a system of interlinked hypertext documents accessed via the Internet...

. A few of the listed genomes may not be in the INSDC database, but in other public databases.

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed

Peer review

Peer review is a process of self-regulation by a profession or a process of evaluation involving qualified individuals within the relevant field. Peer review methods are employed to maintain standards, improve performance and provide credibility...

scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.

Sequenced Bacterial Genomes
Species	Strain	Type	Base Pairs	Genes	Reference
Acidobacteria bacterium	Ellin345	Acidobacteria Acidobacteria Acidobacteria are a newly devised phylum of Bacteria, whose members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture....	5,650,368	4,777	Unpublished
Acinetobacter Acinetobacter Acinetobacter [asz−in−ée−toe–back−ter] is a genus of Gram-negative bacteria belonging to the Gammaproteobacteria. Acinetobacter species are non-motile and oxidase-negative, and occur in pairs under magnification.... sp.	ADP1	Proteobacteria Proteobacteria The Proteobacteria are a major group of bacteria. They include a wide variety of pathogens, such as Escherichia, Salmonella, Vibrio, Helicobacter, and many other notable genera.... Gammaproteobacteria Gammaproteobacteria Gammaproteobacteria is a class of several medically, ecologically and scientifically important groups of bacteria, such as the Enterobacteriaceae , Vibrionaceae and Pseudomonadaceae. An exceeding number of important pathogens belongs to this class, e.g...	3,598,621	3,325
Agrobacterium tumefaciens Agrobacterium tumefaciens Agrobacterium tumefaciens is the causal agent of crown gall disease in over 140 species of dicot. It is a rod shaped, Gram negative soil bacterium...	C58	Proteobacteria Alphaproteobacteria Alphaproteobacteria Alphaproteobacteria is a class of Proteobacteria. Like all Proteobacteria, they are Gram-negative.-Characteristics:The Alphaproteobacteria comprise most phototrophic genera, but also several genera metabolising C1-compounds , symbionts of plants and animals, and a group of pathogens, the...	2,841,581	2,722
Anabaena Anabaena Anabaena is a genus of filamentous cyanobacteria that exists as plankton. It is known for its nitrogen fixing abilities, and they form symbiotic relationships with certain plants, such as the mosquito fern. They are one of four genera of cyanobacteria that produce neurotoxins, which are harmful to... nostoc	PCC7120	Cyanobacteria Nostocales	6,413,771	5,368
Anabaena variabilis	ATCC29413	Cyanobacteria Nostocales	6,365,727	5,039	Unpublished
Anaeromyxobacter dehalogenans	2CP-C	Proteobacteria delta-epsilon	5,013,479	4,346	Unpublished
Anaplasma Anaplasma Anaplasma is a genus of rickettsiales bacteria.Anaplasmas reside in host red blood cells and lead to the disease anaplasmosis. The disease most commonly occurs in tropical areas of the world.... marginale	StMaries	Proteobacteria Alphaproteobacteria	1,197,687	949
Anaplasma phagocytophilum Anaplasma phagocytophilum Anaplasma phagocytophilum is a gram-negative bacterium that is unusual in its tropism to neutrophils...	HZ	Proteobacteria Alphaproteobacteria	1,471,282	1,264
Aquifex aeolicus Aquifex aeolicus Aquifex aeolicus is a rod-shaped prokaryote with a length of 2 to 6 micrometers and a diameter of around half a micrometer. It is one of a handful of species in the Aquificae phylum, an unusual group of thermophilic bacteria that are thought to be some of the oldest species of bacteria.A...	VF5	Aquificae Aquificae The Aquificae phylum is a diverse collection of bacteria that live in harsh environmental settings. They have been found in hot springs, sulfur pools, and thermal ocean vents. Members of the genus Aquifex, for example, are productive in water between 85 to 95 °C. They are the dominant members of... Aquificae	1,551,335	1,522
Azoarcus sp.	EbN1	Proteobacteria Betaproteobacteria Betaproteobacteria Betaproteobacteria is a class of Proteobacteria. Betaproteobacteria are, like all Proteobacteria, gram-negative.The Betaproteobacteria consist of several groups of aerobic or facultative bacteria which are often highly versatile in their degradation capacities, but also contain chemolithotrophic...	4,296,230	4,128
Bacillus anthracis Bacillus anthracis Bacillus anthracis is the pathogen of the Anthrax acute disease. It is a Gram-positive, spore-forming, rod-shaped bacterium, with a width of 1-1.2µm and a length of 3-5µm. It can be grown in an ordinary nutrient medium under aerobic or anaerobic conditions.It is one of few bacteria known to...	Ames	Firmicutes Firmicutes The Firmicutes are a phylum of bacteria, most of which have Gram-positive cell wall structure. A few, however, such as Megasphaera, Pectinatus, Selenomonas and Zymophilus, have a porous pseudo-outer-membrane that causes them to stain Gram-negative... Bacilli	5,227,293	5,311
Bacillus anthracis	Sterne	Firmicutes Bacilli	5,228,663	5,287	Unpublished
Bacillus cereus Bacillus cereus Bacillus cereus is an endemic, soil-dwelling, Gram-positive, rod-shaped, beta hemolytic bacterium. Some strains are harmful to humans and cause foodborne illness, while other strains can be beneficial as probiotics for animals...	ATCC10987	Firmicutes Bacilli	5,224,283	5,603
Bacillus cereus	ATCC14579	Firmicutes Bacilli	5,411,809	5,234
Bacillus cereus	ZK	Firmicutes Bacilli	5,300,915	5,134	Unpublished
Bacillus Bacillus Bacillus is a genus of Gram-positive, rod-shaped bacteria and a member of the division Firmicutes. Bacillus species can be obligate aerobes or facultative anaerobes, and test positive for the enzyme catalase. Ubiquitous in nature, Bacillus includes both free-living and pathogenic species... clausii	KSMK16	Firmicutes Bacilli	4,303,871	4,108
Bacillus halodurans	C125	Firmicutes Bacilli	4,202,352	4,066
Bacillus licheniformis Bacillus licheniformis Bacillus licheniformis is a bacterium commonly found in the soil. It is found on bird feathers, especially chest and back plumage, and most often in ground-dwelling birds and aquatic species ....	ATCC14580	Firmicutes Bacilli	4,222,334	4,152
Bacillus licheniformis	Unspecified	Firmicutes Bacilli	4,222,645	4,196
Bacillus licheniformis	DSM13	Firmicutes Bacilli	4,222,645	4,196
Bacillus subtilis Bacillus subtilis Bacillus subtilis, known also as the hay bacillus or grass bacillus, is a Gram-positive, catalase-positive bacterium commonly found in soil. A member of the genus Bacillus, B. subtilis is rod-shaped, and has the ability to form a tough, protective endospore, allowing the organism to tolerate...	168	Firmicutes Bacilli	4,214,630	4,106
Bacillus thuringiensis Bacillus thuringiensis Bacillus thuringiensis is a Gram-positive, soil-dwelling bacterium, commonly used as a biological pesticide; alternatively, the Cry toxin may be extracted and used as a pesticide. B...	9727	Firmicutes Bacilli	5,237,682	5,117	Unpublished
Bacteroides fragilis Bacteroides fragilis Bacteroides fragilis is a Gram-negative bacillus bacterium species, and an obligate anaerobe of the gut.B. fragilis group is the most commonly isolated bacteriodaceae in anaerobic infections especially those that originate from the gastrointestinal flora. B. fragilis is the most prevalent organism...	NCTC9343	Bacteroidetes Bacteroidetes The phylum Bacteroidetes is composed of three large classes of bacteria that are widely distributed in the environment, including in soil, in sediments, sea water and in the guts and on the skin of animals.... /Chlorobi Bacteroidetes	5,205,140	4,260
Bacteroides fragilis	YCH46	Bacteroidetes/Chlorobi Bacteroidetes	5,277,274	4,578	Unpublished
Bacteroides Bacteroides Bacteroides is a genus of Gram-negative, bacillus bacteria. Bacteroides species are non-endospore-forming, anaerobes, and may be either motile or non-motile, depending on the species. The DNA base composition is 40-48% GC. Unusual in bacterial organisms, Bacteroides membranes contain sphingolipids... thetaiotaomicron	VPI5482	Bacteroidetes/Chlorobi Bacteroidetes	6,260,361	4,778
Bartonella henselae Bartonella henselae Bartonella henselae, formerly Rochalimæa, is a proteobacterium that can cause bacteremia, endocarditis, bacillary angiomatosis, and peliosis hepatis. It is also the causative agent of cat-scratch disease which, as the name suggests, occurs after a cat bite or scratch...	Houston-1	Proteobacteria Alphaproteobacteria	1,931,047	1,612
Bartonella quintana Bartonella quintana Bartonella quintana, originally known as Rochalimaea quintana, and "Rickettsia quintana", is a microorganism that is transmitted by the human body louse. This microorganism is the caustative agent of trench fever...	Toulouse	Proteobacteria Alphaproteobacteria	1,581,384	1,308
Baumannia cicadellinicola	Hc	Proteobacteria Gammaproteobacteria	686,194	595	Unpublished
Bdellovibrio Bdellovibrio Bdellovibrio is a genus of Gram-negative, obligate aerobic bacteria.One of the more notable characteristics of this genus is that members parasitize other Gram-negative bacteria by entering into their periplasmic space and feeding on the biopolymers, e.g. proteins and nucleic acids, of their hosts... bacteriovorus	HD100	Proteobacteria delta-epsilon	3,782,950	3,583
Bifidobacterium longum Bifidobacterium longum Bifidobacterium longum is a species of Gram-positive anaerobic branched rod-shaped bacterium which can be found in the intestines of infant humans. They inhibit the growth of Gram-negative bacteria by producing lactic acid, and digest the complex sugars in human breast milk. Due to its importance,...	NCC2705	Acidobacteria	2,256,640	1,727
Blochmannia floridanus	Strain	Proteobacteria Gammaproteobacteria	705,557	589
Blochmannia pennsylvanicus	bpEN	Proteobacteria Gammaproteobacteria	791,654	610
Bordetella bronchiseptica Bordetella bronchiseptica Bordetella bronchiseptica is a small, gram-negative, rod-shaped bacterium of the genus Bordetella. It can cause infectious bronchitis, but rarely infects humans. Closely related to B. pertussis—the obligate human pathogen that causes pertussis or whooping cough—B...	RB50	Proteobacteria Betaproteobacteria	5,339,179	5,006	Unpublished
Bordetella parapertussis Bordetella parapertussis Bordetella parapertussis is a small Gram-negative bacterium of the genus Bordetella which is adapted to colonise the mammalian respiratory tract. Pertussis caused by B. parapertussis manifests with similar symptoms to B. pertussis-derived disease but tends to be generally less severe. Immunity...	12822	Proteobacteria Betaproteobacteria	4,773,551	4,402	Unpublished
Bordetella pertussis Bordetella pertussis Bordetella pertussis is a Gram-negative, aerobic coccobacillus of the genus Bordetella, and the causative agent of pertussis or whooping cough. Unlike B. bronchiseptica, B. pertussis is non-motile. Its virulence factors include pertussis toxin, filamentous hæmagglutinin, pertactin, fimbria, and...	TohamaI	Proteobacteria Betaproteobacteria	4,086,189	3,806	Unpublished
Borrelia burgdorferi Borrelia burgdorferi Borrelia burgdorferi is a species of Gram negative bacteria of the spirochete class of the genus Borrelia. B. burgdorferi is predominant in North America, but also exists in Europe, and is the agent of Lyme disease....	B31	Spirochaetes	910,724	850
Borrelia garinii	PBi	Spirochaetes	904,246	832
Bradyrhizobium japonicum	USDA110	Proteobacteria Alphaproteobacteria	9,105,828	8,317
Brucella abortus	2308 (chromosome I)	Proteobacteria Alphaproteobacteria	1,156,948	1,164
	2308 (chromosome II)	Proteobacteria Alphaproteobacteria	2,121,359	2,186
Brucella abortus	9-941 (chromosome I)	Proteobacteria Alphaproteobacteria	2,124,241	2,030
	9-941 (chromosome II)	Proteobacteria Alphaproteobacteria	1,162,204	1,055
Brucella melitensis Brucella melitensis -Introduction:Brucella melitensis is a gram negative coccobacillus bacteria from the Brucellaceae family. The bacterium causes Ovine Brucellosis, along with Brucella ovis. It can infect sheep, cattle, and sometimes humans and it can be transmitted by the stable fly...	16M (chromosome I)	Proteobacteria Alphaproteobacteria	2,117,144	2,059
	16M (chromosome II)	Proteobacteria Alphaproteobacteria	1,177,787	1,139
Brucella suis	1330 (chromosome I)	Proteobacteria Alphaproteobacteria	2,107,794	2,123
	1330 (chromosome II)	Proteobacteria Alphaproteobacteria	1,207,381	1,150
Buchnera Buchnera Buchnera can refer to:Buchnera , a plant genus from the family OrobanchaceaeBuchnera , a genus of proteobacteria... aphidicola	APS	Proteobacteria Gammaproteobacteria	640,681	564
Buchnera aphidicola	B	Proteobacteria Gammaproteobacteria	615,980	504
Buchnera aphidicola	Sg	Proteobacteria Gammaproteobacteria	641,454	545
Burkholderia cenocepacia Burkholderia cenocepacia Burkholderia cenocepacia is a species of Gram-negative bacteria that is common in the environment and may cause disease in plants. It is an opportunistic pathogen and human infections are common in patients with cystic fibrosis and chronic granulomatous disease, and are often fatal...	AU1054	Proteobacteria Betaproteobacteria	3,294,563	2,965	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	2,788,459	2,472	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	1,196,094	1,040	Unpublished
Burkholderia mallei Burkholderia mallei Burkholderia mallei is a gram-negative bipolar aerobic bacterium, a Burkholderia-genus human and animal pathogen causing Glanders; the Latin name of this disease gave name to the causative agent species...	ATCC23344	Proteobacteria Betaproteobacteria	3,510,148	2,996	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	2,325,379	2,029
Burkholderia pseudomallei Burkholderia pseudomallei Burkholderia pseudomallei is a Gram-negative, bipolar, aerobic, motile rod-shaped bacterium. It infects humans and animals and causes the disease melioidosis. It is also capable of infecting plants....	1710b	Proteobacteria Betaproteobacteria	4,126,292	3,736	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	3,181,762	2,611	Unpublished
Burkholderia pseudomallei	K96243 (chromosome I)	Proteobacteria Betaproteobacteria	4,074,542	3,460
	K96243 (chromosome II)	Proteobacteria Betaproteobacteria	3,173,005	2,395
Burkholderia species	383	Proteobacteria Betaproteobacteria	3,694,126	3,334	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	3,587,082	3,174	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	1,395,069	1,209	Unpublished
Burkholderia thailandensis Burkholderia thailandensis Burkholderia thailandensis is a non-fermenting motile Gram-negative bacillus that occurs naturally in soil. It is closely related to Burkholderia pseudomallei, but unlike B. pseudomallei, it only rarely causes disease in humans or animals. The lethal inoculum is approximately 1000 times higher...	E264	Proteobacteria Betaproteobacteria	3,809,201	3,276
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	2,914,771	2,358
Burkholderia xenovorans Burkholderia xenovorans Burkholderia xenovorans is a species of Proteobacteria.-Genomics:The genome of Burkholderia xenovorans is one of the largest bacterial genomes completely sequenced to date...	LB400	Proteobacteria Betaproteobacteria	4,895,836	4,430	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	3,363,523	2,960	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	1,471,779	1,312	Unpublished
Campylobacter jejuni Campylobacter jejuni Campylobacter jejuni is a species of curved, helical-shaped, non-spore forming, Gram-negative, microaerophilic bacteria commonly found in animal feces. It is one of the most common causes of human gastroenteritis in the world. Food poisoning caused by Campylobacter species can be severely...	NCTC11168	Proteobacteria delta-epsilon	1,641,481	1,643
Campylobacter jejuni	RM1221	Proteobacteria delta-epsilon	1,777,831	1,838
Carboxydothermus hydrogenoformans	Z2901	Firmicutes Clostridia	2,401,520	2,620	Unpublished
Carsonella ruddii Candidatus Carsonella ruddii Candidatus Carsonella ruddii is an obligate endosymbiotic Gamma Proteobacterium; it has the smallest genome of any characterised bacteria....	PV	Proteobacteria Gammaproteobacteria	159,662	182
Caulobacter crescentus Caulobacter crescentus Caulobacter crescentus is a Gram-negative, oligotrophic bacterium widely distributed in fresh water lakes and streams.Caulobacter is an important model organism for studying the regulation of the cell cycle, asymmetric cell division, and cellular differentiation. Caulobacter daughter cells have...	CB15	Proteobacteria Alphaproteobacteria	4,016,947	3,737
Chlamydia muridarum Chlamydia muridarum Chlamydia muridarum is an intracellular bacterial species that at one time belonged to Chlamydia trachomatis. However, C. trachomatis naturally only infects humans and C...	Nigg	Chlamydiae/Verrucomicrobia Chlamydiae	1,072,950	904
Chlamydia trachomatis Chlamydia trachomatis Chlamydia trachomatis, an obligate intracellular human pathogen, is one of three bacterial species in the genus Chlamydia. C. trachomatis is a Gram-negative bacteria, therefore its cell wall components retain the counter-stain safranin and appear pink under a light microscope.The inclusion bodies...	AHAR13	Chlamydiae/Verrucomicrobia Chlamydiae	1,044,459	911
Chlamydia trachomatis	DUW	Chlamydiae/Verrucomicrobia Chlamydiae	1,042,519	894
Chlamydophila abortus Chlamydophila abortus Chlamydophila abortus is a species in Chlamydiae that causes abortion and fetal death in mammals, including humans. Chlamydophila abortus was previously classified as Chlamydia psittaci along with all Chlamydiae except Chlamydia trachomatis. This was based on a lack of evident glycogen production...	S26-3	Chlamydiae/Verrucomicrobia Chlamydiae	1,144,377	961
Chlamydophila caviae Chlamydophila caviae Chlamydophila caviae is a bacterium that can be recovered from the conjunctiva of Guinea pigs suffering from ocular inflammation and eye discharge. It is also possible to infect the genital tract of Guinea pigs with C. caviae and elicit a disease that is very similar to human Chlamydia trachomatis...	GPIC	Chlamydiae Chlamydiae Chlamydiae is a bacterial phylum and class whose members are obligate intracellular pathogens. Many Chlamydiae coexist in an asymptomatic state within specific hosts, and it is widely believed that these hosts provide a natural reservoir for these species.... /Verrucomicrobia Chlamydiae	1,173,390	998
Chlamydophila felis Chlamydophila felis Chlamydophila felis is a bacterium endemic among house cats worldwide, primarily causing inflammation of feline conjunctiva, rhinitis and respiratory problems. C. felis can be recovered from the stomach and reproductive tract. Zoonotic infection of humans with C. felis has been reported...	FeC56	Chlamydiae/Verrucomicrobia Chlamydiae	1,166,239	1,005	Unpublished
Chlamydophila pneumoniae Chlamydophila pneumoniae Chlamydophila pneumoniae is a species of Chlamydophila, an obligate intracellular bacteria that infects humans and is a major cause of pneumonia....	AR39	Chlamydiae/Verrucomicrobia Chlamydiae	1,229,853	1,110
Chlamydophila pneumoniae	CWL029	Chlamydiae/Verrucomicrobia Chlamydiae	1,230,230	1,052
Chlamydophila pneumoniae	J138	Chlamydiae/Verrucomicrobia Chlamydiae	1,226,565	1,069
Chlamydophila pneumoniae	TW183	Chlamydiae/Verrucomicrobia Chlamydiae	1,225,935	1,113	Unpublished
Chlorobium chlorochromatii	CaD3	Bacteroidetes/Chlorobi Chlorobi	2,572,079	2,002	Unpublished
Chlorobium tepidum	TLS	Bacteroidetes/Chlorobi Chlorobi	2,154,946	2,255
Chromobacterium violaceum	ATCC12472	Proteobacteria Betaproteobacteria	4,751,080	4,407
Chromohalobacter salexigens	DSM3043	Proteobacteria Gammaproteobacteria	3,696,649	3,298	Unpublished
Clostridium acetobutylicum Clostridium acetobutylicum Clostridium acetobutylicum, ATCC 824, is included in the genus Clostridium, is a commercially valuable bacterium sometimes called the "Weizmann Organism", after Jewish-Russian born Chaim Weizmann, then senior lecturer at the University of Manchester, England, used them in 1916 as a bio-chemical...	ATCC824	Firmicutes Clostridia	3,940,880	3,672
Clostridium difficile Clostridium difficile Clostridium difficile , also known as "CDF/cdf", or "C...	QCD-32g58	Firmicutes Clostridia	3,840,681		Unpublished
Clostridium perfringens Clostridium perfringens Clostridium perfringens is a Gram-positive, rod-shaped, anaerobic, spore-forming bacterium of the genus Clostridium. C. perfringens is ever present in nature and can be found as a normal component of decaying vegetation, marine sediment, the intestinal tract of humans and other vertebrates,...	13	Firmicutes Clostridia	3,031,430	2,660
Clostridium tetani Clostridium tetani Clostridium tetani is a rod-shaped, anaerobic bacterium of the genus Clostridium. Like other Clostridium species, it is Gram-positive, and its appearance on a gram stain resembles tennis rackets or drumsticks. C. tetani is found as spores in soil or in the gastrointestinal tract of animals. C...	E88	Firmicutes Clostridia	2,799,251	2,373
Colwellia psychrerythraea	34H	Proteobacteria Gammaproteobacteria	5,373,180	4,910	Unpublished
Corynebacterium diphtheriae Corynebacterium diphtheriae Corynebacterium diphtheriae is a pathogenic bacterium that causes diphtheria. It is also known as the Klebs-Löffler bacillus, because it was discovered in 1884 by German bacteriologists Edwin Klebs and Friedrich Löffler .-Classification:Four subspecies are recognized: C. diphtheriae mitis, C....	NCTC13129	Acidobacteria	2,488,635	2,320
Corynebacterium Corynebacterium Corynebacterium is a genus of Gram-positive rod-shaped bacteria. They are widely distributed in nature and are mostly innocuous. Some are useful in industrial settings such as C. glutamicum. Others can cause human disease. C... efficiens	YS314	Acidobacteria	3,147,090	2,942
Corynebacterium glutamicum	ATCC13032	Acidobacteria	3,309,401	3,099	Unpublished
Unspecified	Unspecified	Acidobacteria	3,282,708	3,058
Corynebacterium jeikeium Corynebacterium jeikeium Corynebacterium jeikeium is a rod-shaped, catalase-positive, aerobic species of actinobacteria in the genus Corynebacterium. C. jeikeium is pathogenic, typically causing an opportunistic infection seen most frequently in bone marrow transplant patients.C. jeikeium is usually susceptible to...	K411	Acidobacteria	2,462,499	2,104
Coxiella burnetii	RSA493	Proteobacteria Gammaproteobacteria	1,995,281	2,016
Cyanobacteria bacterium	YellowstoneA	Cyanobacteria Chroococcales	2,932,766	2,760
Cyanobacteria bacterium	YellowstoneB	Cyanobacteria Chroococcales	3,046,682	2,862
Cytophaga hutchinsonii	ATCC33406	Bacteroidetes/Chlorobi Chlorobi	4,433,218		Unpublished
Dechloromonas aromatica	RCB	Proteobacteria Betaproteobacteria	4,501,104	4,171	Unpublished
Dehalococcoides etheno	195	Chloroflexi Dehalococcoidetes	1,469,720	1,580
Dehalococcoides species	CBDB1	Chloroflexi Dehalococcoidetes	1,395,502	1,458
Deinococcus Deinococcus The Deinococcus is the one genus of three of the Deinococcales group from the Deinococcus-Thermus phylum highly resistant to environmental hazards.There are 47 species of Deinococcus described according to NCBI on 25 august 2011 :... geothermalis	DSM11300	Deinococcus-Thermus Deinococci	2,467,205	2,335	Unpublished
Deinococcus radiodurans Deinococcus radiodurans Deinococcus radiodurans is an extremophilic bacterium, one of the most radioresistant organisms known. It can survive cold, dehydration, vacuum, and acid, and is therefore known as a polyextremophile and has been listed as the world's toughest bacterium in The Guinness Book Of World Records.-Name...	R1	Deinococcus-Thermus Deinococci	2,648,638	2,579
Unspecified	Unspecified	Deinococcus-Thermus Deinococci	412,348	357
Desulfitobacterium hafniense	Y51	Firmicutes Clostridia	5,727,534	5,060
Desulfotalea psychrophila	LSv54	Proteobacteria delta-epsilon	3,523,383	3,118	Unpublished
Desulfovibrio desulfuricans	G20	Proteobacteria delta-epsilon	3,730,232	3,775	Unpublished
Desulfovibrio vulgaris	Hildenborough	Proteobacteria delta-epsilon	3,570,858	3,379
Ehrlichia canis	Jake	Proteobacteria Alphaproteobacteria	1,315,030	925	Unpublished
Ehrlichia chaffeensis	Arkansas	Proteobacteria Alphaproteobacteria	1,176,248	1,105
Ehrlichia ruminantium	Gardel	Proteobacteria Alphaproteobacteria	1,499,920	950	Unpublished
Ehrlichia ruminantium	Welgevonden	Proteobacteria Alphaproteobacteria	1,512,977	958	Unpublished
Unspecified	Unspecified	Proteobacteria Alphaproteobacteria	1,516,355	920
Enterococcus faecalis	V583	Firmicutes Bacilli	3,218,031	3,113
Erwinia carotovora	SCRI1043	Proteobacteria Gammaproteobacteria	5,064,019	4,492	Unpublished
Erythrobacter litoralis	HTCC2594	Proteobacteria Alphaproteobacteria	3,052,398	3,011	Unpublished
Escherichia coli Escherichia coli Escherichia coli is a Gram-negative, rod-shaped bacterium that is commonly found in the lower intestine of warm-blooded organisms . Most E. coli strains are harmless, but some serotypes can cause serious food poisoning in humans, and are occasionally responsible for product recalls...	536	Proteobacteria Gammaproteobacteria	4,938,920	4,685	Unpublished
Escherichia coli	CFT073	Proteobacteria Gammaproteobacteria	5,231,428	5,379
Escherichia coli	K-12	Proteobacteria Gammaproteobacteria	4,639,675	4,331
Unspecified	Unspecified	Proteobacteria Gammaproteobacteria	4,646,332	4,337
Escherichia coli	O157:H7	Proteobacteria Gammaproteobacteria	5,528,445	5,349
Unspecified	Unspecified	Proteobacteria Gammaproteobacteria	5,498,450	5,361
Escherichia coli	UTI89	Proteobacteria Gammaproteobacteria	5,065,741	5,066	Unpublished
Francisella tularensis	LVS	Proteobacteria Gammaproteobacteria	1,895,994	1,967	Unpublished
Francisella tularensis	SCHUS4	Proteobacteria Gammaproteobacteria	1,892,819	1,804
Frankia species	CcI3	Acidobacteria	5,433,628	4,499	Unpublished
Fusobacterium nucleatum	ATCC25586	Fusobacteria Fusobacteria	2,174,500	2,067
Geobacillus kaustophilus	HTA426	Firmicutes Bacilli	3,544,776	3,498
Geobacter metallireducens	GS15	Proteobacteria delta-epsilon	3,997,420	3,519	Unpublished
Geobacter sulfurreducens	PCA	Proteobacteria delta-epsilon	3,814,139	3,447
Gloeobacter violaceus	PCC7421	Cyanobacteria Gloeobacteria	4,659,019	4,430
Gluconobacter oxydans	621H	Proteobacteria Alphaproteobacteria	2,702,173	2,432
Haemophilus ducreyi Haemophilus ducreyi Haemophilus ducreyi is a fastidious gram-negative coccobacillus causing the sexually transmitted disease chancroid, a major cause of genital ulceration in developing countries characterized by painful sores on the genitalia. Another early symptom is dark or light green shears in excrement...	3500HP	Proteobacteria Gammaproteobacteria	1,698,955	1,717	Unpublished
Haemophilus influenzae Haemophilus influenzae Haemophilus influenzae, formerly called Pfeiffer's bacillus or Bacillus influenzae, Gram-negative, rod-shaped bacterium first described in 1892 by Richard Pfeiffer during an influenza pandemic. A member of the Pasteurellaceae family, it is generally aerobic, but can grow as a facultative anaerobe. H...	86-028NP	Proteobacteria Gammaproteobacteria	1,913,428	1,792
Haemophilus influenzae	Rd	Proteobacteria Gammaproteobacteria	1,830,138	1,709
Hahella chejuensis	KCTC2396	Proteobacteria Gammaproteobacteria	7,215,267	6,782
Helicobacter Helicobacter Helicobacter is a genus of Gram-negative bacteria possessing a characteristic helix shape. They were initially considered to be members of the Campylobacter genus, but since 1989 they have been grouped in their own genus... hepaticus	ATCC51449	Proteobacteria delta-epsilon	1,799,146	1,875
Helicobacter pylori Helicobacter pylori Helicobacter pylori , previously named Campylobacter pyloridis, is a Gram-negative, microaerophilic bacterium found in the stomach. It was identified in 1982 by Barry Marshall and Robin Warren, who found that it was present in patients with chronic gastritis and gastric ulcers, conditions that were...	26695	Proteobacteria delta-epsilon	1,667,867	1,566
Helicobacter pylori	HPAG1	Proteobacteria delta-epsilon	1,596,366	1,536	Unpublished
Helicobacter pylori	J99	Proteobacteria delta-epsilon	1,643,831	1,491
Idiomarina loihiensis	L2TR	Proteobacteria Gammaproteobacteria	2,839,318	2,628
Jannaschia species	CCS1	Proteobacteria Alphaproteobacteria	4,317,977	4,212	Unpublished
Lactobacillus acidophilus Lactobacillus acidophilus Lactobacillus acidophilus is a species in the genus Lactobacillus. L. acidophilus is a homofermentative species, fermenting sugars into lactic acid, which grows readily at rather low pH values and has an optimum growth temperature of 37 °C . L...	NCFM	Firmicutes Bacilli	1,993,564	1,864
Lactobacillus Lactobacillus Lactobacillus is a genus of Gram-positive facultative anaerobic or microaerophilic rod-shaped bacteria. They are a major part of the lactic acid bacteria group, named as such because most of its members convert lactose and other sugars to lactic acid. They are common and usually benign... delbrueckii	bulgaricus	Firmicutes Bacilli	1,864,998	2,096	Unpublished
Lactobacillus johnsonii	NCC533	Firmicutes Bacilli	1,992,676	1,821
Lactobacillus plantarum	WCFS1	Firmicutes Bacilli	3,308,274	3,051
Lactobacillus sakei	23K	Firmicutes Bacilli	1,884,661	1,885	Unpublished
Lactobacillus sakei	sakei23K	Firmicutes Bacilli	1,884,661	1,885	Unpublished
Lactobacillus salivarius	UCC118	Firmicutes Bacilli	1,827,111	1,717	Unpublished
Lactococcus lactis	IL1403	Firmicutes Bacilli	2,365,589	2,266
Lawsonia intracellularis	PHEMN1-00	Proteobacteria delta-epsilon	1,719,014	1,344	Unpublished
Unspecified	Unspecified	Proteobacteria delta-epsilon	39,794	24	Unpublished
Unspecified	Unspecified	Proteobacteria delta-epsilon	194,553	104	Unpublished
Unspecified	Unspecified	Proteobacteria delta-epsilon	1,457,619	1,187	Unpublished
Legionella pneumophila Legionella pneumophila Legionella pneumophila is a thin, ærobic, pleomorphic, flagellated, non-spore forming, Gram-negative bacterium of the genus Legionella. L. pneumophila is the primary human pathogenic bacterium in this group and is the causative agent of legionellosis or Legionnaires' disease.-Characterization:L...	Lens	Proteobacteria Gammaproteobacteria	3,345,687	2,947
Legionella pneumophila	Paris	Proteobacteria Gammaproteobacteria	3,503,610	3,082
Legionella pneumophila	Philadelphia1	Proteobacteria Gammaproteobacteria	3,397,754	2,942	Unpublished
Leifsonia xyli Leifsonia Leifsonia xyli subsp. xyli is a small, fastidious, Gram-positive, coryneform bacterium that causes ratoon stunting disease, a major worldwide disease of sugarcane.-Classification:...	CTCB07	Acidobacteria	2,584,158	2,030	Unpublished
Leptospira Leptospira Leptospira is a genus of spirochaete bacteria, including a small number of pathogenic and saprophytic species... interrogans	56601	Spirochaetes	4,332,241	4,358
Unspecified	Unspecified	Spirochaetes	358,943	367
Leptospira interrogans	FiocruzL1130	Spirochaetes	4,277,185	3,394
Unspecified	Unspecified	Spirochaetes	350,181	264
Listeria innocua	Clip11262	Firmicutes Bacilli	3,011,208	2,981
Listeria monocyto	EGD	Firmicutes Bacilli	2,944,528	2,855
Listeria monocyto	4b	Firmicutes Bacilli	2,905,187	2,821
Magnetospirillum Magnetospirillum Magnetospirillum is a Gram-negative, microaerophilic genus of magnetotactic bacterium, first isolated from pond water by the microbiologist R. P. Blakemore in 1975. It is characterized by a spirillar, or helical, morphology. It is also a motile bacterium owing to the presence of a polar flagellum... magneticum	AMB1	Proteobacteria Alphaproteobacteria	4,967,148	4,559
Mannheimia succiniciproducens	MBEL55E	Proteobacteria Gammaproteobacteria	2,314,078	2,384	Unpublished
Mesoplasma florum	L1	Firmicutes Mollicutes	793,224	683	Unpublished
Mesorhizobium loti	MAFF303099	Proteobacteria Alphaproteobacteria	7,036,071	6,752
Methylobacillus flagellatus	KT	Proteobacteria Betaproteobacteria	2,971,517	2,753	Unpublished
Methylococcus capsulatus Methylococcus capsulatus Methylococcus capsulatus is an obligately methanotrophic gram-negative, non-motile coccoid bacterium. M. capsulatus cells are encapsulated and tend to have a diplococcoid arrangement. In addition to methane, M. capsulatus is able to oxidize some organic hydrogen containing compounds such as...	Bath	Proteobacteria Gammaproteobacteria	3,304,561	2,960
Moorella thermoacetica	ATCC39073	Firmicutes Clostridia	2,628,784	2,465	Unpublished
Mycobacterium Mycobacterium Mycobacterium is a genus of Actinobacteria, given its own family, the Mycobacteriaceae. The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis and leprosy... avium	k10	Acidobacteria	4,829,781	4,350
Mycobacterium bovis	AF212297	Acidobacteria	4,345,492	3,953
Mycobacterium leprae	TN	Acidobacteria	3,268,203	2,720
Mycobacterium tuberculosis Mycobacterium tuberculosis Mycobacterium tuberculosis is a pathogenic bacterial species in the genus Mycobacterium and the causative agent of most cases of tuberculosis . First discovered in 1882 by Robert Koch, M...	CDC1551	Acidobacteria	4,403,837	4,189	Unpublished
Mycobacterium tuberculosis	H37Rv	Acidobacteria	4,411,532	3,999
Mycoplasma Mycoplasma Mycoplasma refers to a genus of bacteria that lack a cell wall. Without a cell wall, they are unaffected by many common antibiotics such as penicillin or other beta-lactam antibiotics that target cell wall synthesis. They can be parasitic or saprotrophic. Several species are pathogenic in humans,... capricolum	ATCC27343	Firmicutes Mollicutes	1,010,023	812	Unpublished
Mycoplasma gallisepticum Mycoplasma gallisepticum Mycoplasma gallisepticum is a bacterium belonging to the class Mollicutes and the family Mycoplasmataceae. It is the causative agent of chronic respiratory disease in chickens and infectious sinusitis in turkeys, chickens, game birds, pigeons, and passerine birds of all ages.-Transmission:MG is...	R	Firmicutes Mollicutes	996,422	726
Mycoplasma genitalium Mycoplasma genitalium Mycoplasma genitalium is a small parasitic bacterium that lives on the ciliated epithelial cells of the primate genital and respiratory tracts. M. genitalium is the smallest known genome that can constitute a cell, and the second-smallest bacterium after the recently-discovered endosymbiont...	G37	Firmicutes Mollicutes	580,076	476
Mycoplasma hyopneumoniae Mycoplasma hyopneumoniae -Introduction:Mycoplasma hyopneumoniae is a species of bacteria known to cause the disease Porcine Enzootic Pneumonia, a highly contagious and chronic disease affecting pigs . As with other mollicutes, M...	232	Firmicutes Mollicutes	892,758	691
Mycoplasma hyopneumoniae	7448	Firmicutes Mollicutes	920,079	663
Mycoplasma hyopneumoniae	J	Firmicutes Mollicutes	897,405	665
Mycoplasma mobile	163K	Firmicutes Mollicutes	777,079	635
Mycoplasma mycoides	SC	Firmicutes Mollicutes	1,211,703	1,016
Mycoplasma penetrans	HF2	Firmicutes Mollicutes	1,358,633	1,037
Mycoplasma pneumoniae Mycoplasma pneumoniae Mycoplasma pneumoniae is a very small bacterium in the class Mollicutes.It causes the disease mycoplasma pneumonia, a form of atypical bacterial pneumonia, and is related to cold agglutinin disease.-Cell wall/Treatment:...	M129	Firmicutes Mollicutes	816,394	688
Mycoplasma pulmonis	UAB	Firmicutes Mollicutes	963,879	782
Mycoplasma synoviae Mycoplasma synoviae -Introduction:The bacteria M. synoviae is a member of the mycoplasma genus. It causes disease in the joints, bones and respiratory system of birds. It is found throughout the world and infection may be referred to as Infectious Synovitis, Avian Mycoplasmosis, Infectious Sinusitis and Mycoplasma...	53	Firmicutes Mollicutes	799,476	672
Myxococcus xanthus	DK1622	Proteobacteria delta-epsilon	9,139,763	7,331	Unpublished
Neisseria gonorrhoeae Neisseria gonorrhoeae Neisseria gonorrhoeae, also known as gonococci , or gonococcus , is a species of Gram-negative coffee bean-shaped diplococci bacteria responsible for the sexually transmitted infection gonorrhea.N...	FA1090	Proteobacteria Betaproteobacteria	2,153,922	2,002	Unpublished
Neisseria meningitidis Neisseria meningitidis Neisseria meningitidis, often referred to as meningococcus, is a bacterium that can cause meningitis and other forms of meningococcal disease such as meningococcemia, a life threatening sepsis. N. meningitidis is a major cause of morbidity and mortality during childhood in industrialized countries...	A	Proteobacteria Betaproteobacteria	2,184,406	2,121
Neisseria meningitidis	B	Proteobacteria Betaproteobacteria	2,272,360	2,063
Neorickettsia sennetsu	Miyayama	Proteobacteria Alphaproteobacteria	859,006	932
Nitrobacter Nitrobacter Nitrobacter is genus of mostly rod-shaped, gram-negative, and chemoautotrophic bacteria.Nitrobacter plays an important role in the nitrogen cycle by oxidizing nitrite into nitrate in soil... hamburgensis	X14	Proteobacteria Alphaproteobacteria	4,406,967	3,804	Unpublished
Nitrobacter winogradskyi	Nb255	Proteobacteria Alphaproteobacteria	3,402,093	3,122	Unpublished
Nitrosococcus oceani	ATCC19707	Proteobacteria Gammaproteobacteria	3,481,691	2,976	Unpublished
Nitrosomonas europaea	Schmidt	Proteobacteria Betaproteobacteria	2,812,094	2,574
Nitrosospira multiformis	ATCC25196	Proteobacteria Betaproteobacteria	3,184,243	2,757	Unpublished
Nocardia farcinica	IFM10152	Acidobacteria	6,021,225	5,683
Novosphingobium aromaticivorans	DSM12444	Proteobacteria Alphaproteobacteria	3,561,584	3,324	Unpublished
Oceanobacillus iheyensis	HTE831	Firmicutes Bacilli	3,630,528	3,496
Parachlamy diaspecies	UWE25	Chlamydiae/Verrucomicrobia Chlamydiae	2,414,465	2,031
Pasteurella multocida	Pm70	Proteobacteria Gammaproteobacteria	2,257,487	2,014
Pelagibacter ubique Pelagibacter ubique Pelagibacter, with the single species P. ubique, was isolated in 2002 and given a specific name, although it has not yet been validly published according to the bacteriological code. It is an abundant member of the SAR11 clade in the phylum Alphaproteobacteria...	HTCC1062	Proteobacteria Alphaproteobacteria	1,308,759	1,354
Pelobacter carbinolicus	DSM2380	Proteobacteria delta-epsilon	3,665,893	3,119	Unpublished
Pelodictyon luteolum	DSM273	Bacteroidetes/Chlorobi Chlorobi	2,364,842	2,083	Unpublished
Photobacterium profundum Photobacterium profundum Photobacterium profundum is a deep sea Gammaproteobacterium, belonging to the family Vibrionaceae and genus Photobacterium. Like other members of this genus, P. profundum is a marine organism and has two circular chromosomes. P...	SS9	Proteobacteria Gammaproteobacteria	4,085,304	3,416	Unpublished
Unspecified	Unspecified	Proteobacteria Gammaproteobacteria	2,237,943	1,997	Unpublished
Photorhabdus luminescens	laumondiiTTO1	Proteobacteria Gammaproteobacteria	5,688,987	4,905	Unpublished
Phytoplas maasteris	AYWB	Firmicutes Mollicutes	706,569	671	Unpublished
Phytoplas maasteris	OY	Firmicutes Mollicutes	860,631	754
Polaromonas species	JS666	Proteobacteria Betaproteobacteria	5,200,264	4,817	Unpublished
Porphyromonas gingivalis	W83	Bacteroidetes/Chlorobi Bacteroidetes	2,343,476	1,909
Prochlorococcus marinus	MED4	Cyanobacteria Prochlorales	1,657,990	1,716
Prochlorococcus marinus	MIT9312	Cyanobacteria Prochlorales	1,709,204	1,809	Unpublished
Prochlorococcus marinus	MIT9313	Cyanobacteria Prochlorales	2,410,873	2,273
Prochlorococcus marinus	NATL2A	Cyanobacteria Prochlorales	1,842,899	1,890	Unpublished
Prochlorococcus marinus	SS120	Cyanobacteria Prochlorales	1,751,080	1,882
Propionibacterium acnes	KPA171202	Acidobacteria	2,560,265	2,297	Unpublished
Pseudoalteromonas haloplanktis	TAC125	Proteobacteria Gammaproteobacteria	3,214,944	2,941
Unspecified	Unspecified	Proteobacteria Gammaproteobacteria	635,328	546
Pseudomonas aeruginosa Pseudomonas aeruginosa Pseudomonas aeruginosa is a common bacterium that can cause disease in animals, including humans. It is found in soil, water, skin flora, and most man-made environments throughout the world. It thrives not only in normal atmospheres, but also in hypoxic atmospheres, and has, thus, colonized many...	PAO1	Proteobacteria Gammaproteobacteria	6,264,403	5,566
Pseudomonas Pseudomonas Pseudomonas is a genus of gammaproteobacteria, belonging to the family Pseudomonadaceae containing 191 validly described species.Recently, 16S rRNA sequence analysis has redefined the taxonomy of many bacterial species. As a result, the genus Pseudomonas includes strains formerly classified in the... entomophila	L48	Proteobacteria Gammaproteobacteria	5,888,780	5,168	Unpublished
Pseudomonas fluorescens	Pf-5	Proteobacteria Gammaproteobacteria	7,074,893	6,137
Pseudomonas fluorescens	PfO-1	Proteobacteria Gammaproteobacteria	6,438,405	5,736	Unpublished
Pseudomonas putida Pseudomonas putida Pseudomonas putida is a gram-negative rod-shaped saprotrophic soil bacterium. Based on 16S rRNA analysis, P. putida has been placed in the P. putida group, to which it lends its name....	KT2440	Proteobacteria Gammaproteobacteria	6,181,863	5,350
Pseudomonas syringae	B728a	Proteobacteria Gammaproteobacteria	6,093,698	5,136
Pseudomonas syringae Pseudomonas syringae Pseudomonas syringae is a rod shaped, Gram-negative bacterium with polar flagella. It is a plant pathogen which can infect a wide range of plant species, and exists as over 50 different pathovars, all of which are available to legitimate researches via international culture collections such as the...	DC3000	Proteobacteria Gammaproteobacteria	6,397,126	5,470
Pseudomonas syringae	phaseolicola1448A	Proteobacteria Gammaproteobacteria	5,928,787	4,983	Unpublished
Psychrobacter arcticum	273-4	Proteobacteria Gammaproteobacteria	2,650,701	2,147	Unpublished
Psychrobacter cryohalolentis	K5	Proteobacteria Gammaproteobacteria	41,221	44	Unpublished
Unspecified	Unspecified	Proteobacteria Gammaproteobacteria	3,059,876	2,467	Unpublished
Ralstonia Ralstonia Ralstonia is a genus of proteobacteria, previously included in the genus Pseudomonas. It is named after the American bacteriologist E. Ralston.-Genomics:* *... eutropha	JMP134	Proteobacteria Betaproteobacteria	3,806,533	3,439	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	2,726,152	2,407	Unpublished
Ralstonia metallidurans	CH34	Proteobacteria Betaproteobacteria	3,928,089	3,601	Unpublished
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	2,580,084	2,313	Unpublished
Ralstonia solanacearum	GMI1000	Proteobacteria Betaproteobacteria	3,716,413	3,441
Unspecified	Unspecified	Proteobacteria Betaproteobacteria	2,094,509	1,679
Rhizobium Rhizobium Rhizobium is a genus of Gram-negative soil bacteria that fix nitrogen. Rhizobium forms an endosymbiotic nitrogen fixing association with roots of legumes and Parasponia.... etli	CFN42	Proteobacteria Alphaproteobacteria	4,381,608	4,067
Rhizobium leguminosarum	viciae3841	Proteobacteria Alphaproteobacteria	7,751,309	4,746	Unpublished
Rhodobacter sphaeroides	2.4.1	Proteobacteria Alphaproteobacteria	3,188,609	3,022	Unpublished
Unspecified	Unspecified	Proteobacteria Alphaproteobacteria	943,016	835	Unpublished
Rhodoferax ferrireducens	DSM15236	Proteobacteria Betaproteobacteria	4,712,337	4,170	Unpublished
Rhodopirellula baltica	strain1	Planctomycetes Planctomycetacia	7,145,576	7,325	Unpublished
Rhodopseudomonas palustris	BisB18	Proteobacteria Alphaproteobacteria	5,513,844	4,886	Unpublished
Rhodopseudomonas palustris	BisB5	Proteobacteria Alphaproteobacteria	4,892,717	4,397	Unpublished
Rhodopseudomonas palustris Rhodopseudomonas palustris Rhodopseudomonas palustris is a gram-negative purple non-sulfur bacteria, notable for its ability to switch between four different modes of metabolism....	CGA009	Proteobacteria Alphaproteobacteria	5,459,213	4,833
Rhodopseudomonas palustris	HaA2	Proteobacteria Alphaproteobacteria	5,331,656	4,683	Unpublished
Rhodospirillum rubrum	ATCC11170	Proteobacteria Alphaproteobacteria	4,352,825	3,791	Unpublished
Rickettsia bellii	RML369-C	Proteobacteria Alphaproteobacteria	1,522,076	1,429	Unpublished
Rickettsia conorii Rickettsia conorii Rickettsia conorii is a unicellular, gram-negative, obligate intracellular bacterium of the genus Rickettsia that causes human disease called Boutonneuse fever, Mediterranean spotted fever, Israeli tick typhus, Astrakhan spotted fever, Kenya tick typhus, Indian tick typhus, or other names that...	Malish7	Proteobacteria Alphaproteobacteria	1,268,755	1,374
Rickettsia felis Rickettsia felis Rickettsia felis or cat-flea typhus is a species of Rickettsia that causes flea-borne spotted fever in cats. The bacteria can also infect humans and cause illness. Fleas are the vector carriers of the bacteria and it has been found in cat flea populations of North and South America, Southern...	URRWXCal2	Proteobacteria Alphaproteobacteria	1,485,148	1,400
Rickettsia prowazekii Rickettsia prowazekii Rickettsia prowazekii is a species of gram negative, Alpha Proteobacteria, obligate intracellular parasitic, aerobic bacteria that is the etiologic agent of epidemic typhus, transmitted in the feces of lice. In North America, the main reservoir for R. prowazekii is the flying squirrel. R...	Madrid-E	Proteobacteria Alphaproteobacteria	1,111,523	834
Rickettsia typhi Rickettsia typhi Rickettsia typhi is a species of the genus Rickettsia.It is the causative agent of Murine typhus.The genome is similar to that of Rickettsia prowazekii.-References:...	Wilmington	Proteobacteria Alphaproteobacteria	1,111,496	838
Rubrobacter xylanophilus	DSM9941	Acidobacteria	3,225,748	3,140	Unpublished
Saccharophagus degradans	Feb-40	Proteobacteria Gammaproteobacteria	5,057,531	4,008	Unpublished
Salinibacter ruber	DSM13855	Bacteroidetes/Chlorobi Bacteroidetes	3,551,823	2,801
Salmonella enterica Salmonella enterica Salmonella enterica is a rod-shaped flagellated, facultative anaerobic, Gram-negative bacterium, and a member of the genus Salmonella.- Epidemiology :...	ATCC9150	Proteobacteria Gammaproteobacteria	4,585,229	4,093
Salmonella Salmonella Salmonella is a genus of rod-shaped, Gram-negative, non-spore-forming, predominantly motile enterobacteria with diameters around 0.7 to 1.5 µm, lengths from 2 to 5 µm, and flagella which grade in all directions . They are chemoorganotrophs, obtaining their energy from oxidation and reduction... enterica	SCB67	Proteobacteria Gammaproteobacteria	4,755,700	4,445
Salmonella enterica	Ty2	Proteobacteria Gammaproteobacteria	4,791,961	4,323
Salmonella enterica	typhiCT18	Proteobacteria Gammaproteobacteria	4,809,037	4,600
Salmonella typhimurium	LT2	Proteobacteria Gammaproteobacteria	4,857,432	4,452
Shewanella denitrificans	OS217	Proteobacteria Gammaproteobacteria	4,545,906	3,754	Unpublished
Shewanella oneidensis	MR1	Proteobacteria Gammaproteobacteria	4,969,803	4,630
Shigella Shigella Shigella is a genus of Gram-negative, nonspore forming, non-motile, rod-shaped bacteria closely related to Escherichia coli and Salmonella. The causative agent of human shigellosis, Shigella causes disease in primates, but not in other mammals. It is only naturally found in humans and apes. During... boydii	Sb227	Proteobacteria Gammaproteobacteria	4,519,823	4,142
Shigella dysenteriae	Sd197	Proteobacteria Gammaproteobacteria	4,369,232	4,277
Shigella flexneri	2457T	Proteobacteria Gammaproteobacteria	4,599,354	4,073
Shigella flexneri	2a301	Proteobacteria Gammaproteobacteria	4,607,203	4,436
Shigella sonnei	Ss046	Proteobacteria Gammaproteobacteria	4,825,265	4,224
Silicibacter pomeroyi	DSS3	Proteobacteria Alphaproteobacteria	4,109,442	3,810
Silicibacter species	TM1040	Proteobacteria Alphaproteobacteria	3,200,938	3,030	Unpublished
Sinorhizobium medicae	WSM419	Alphaproteobacteria Alphaproteobacteria Alphaproteobacteria is a class of Proteobacteria. Like all Proteobacteria, they are Gram-negative.-Characteristics:The Alphaproteobacteria comprise most phototrophic genera, but also several genera metabolising C1-compounds , symbionts of plants and animals, and a group of pathogens, the...	3,781,904	3,635
Sinorhizobium meliloti Sinorhizobium meliloti Sinorhizobium meliloti is a Gram-negative nitrogen-fixing bacterium . It forms a symbiotic relationship with legumes from the genera Medicago, Melilotus and Trigonella, including the model legume Medicago truncatula. This symbiosis results in a new plant organ termed a root nodule. The S...	Rm1021	Alphaproteobacteria Alphaproteobacteria Alphaproteobacteria is a class of Proteobacteria. Like all Proteobacteria, they are Gram-negative.-Characteristics:The Alphaproteobacteria comprise most phototrophic genera, but also several genera metabolising C1-compounds , symbionts of plants and animals, and a group of pathogens, the...	3,654,135	3,341
Sodalis glossinidius	morsitans	Proteobacteria Gammaproteobacteria	4,171,146	2,432
Sphingopyxis alaskensis	RB2256	Proteobacteria Alphaproteobacteria	3,345,170	3,165	Unpublished
Staphylococcus aureus Staphylococcus aureus Staphylococcus aureus is a facultative anaerobic Gram-positive coccal bacterium. It is frequently found as part of the normal skin flora on the skin and nasal passages. It is estimated that 20% of the human population are long-term carriers of S. aureus. S. aureus is the most common species of...	COL	Firmicutes Bacilli	2,809,422	2,673
Staphylococcus Staphylococcus Staphylococcus is a genus of Gram-positive bacteria. Under the microscope they appear round , and form in grape-like clusters.... aureus	MRSA252	Firmicutes Bacilli	2,902,619	2,744
Staphylococcus aureus	MSSA476	Firmicutes Bacilli	2,799,802	2,619
Staphylococcus aureus	Mu50	Firmicutes Bacilli	2,878,529	2,699
Staphylococcus aureus	MW2	Firmicutes Bacilli	2,820,462	2,632
Staphylococcus aureus	N315	Firmicutes Bacilli	2,814,816	2,593
Staphylococcus aureus	NCTC8325	Firmicutes Bacilli	2,821,361	2,892	Unpublished
Staphylococcus aureus	RF122	Firmicutes Bacilli	2,742,531	2,589	Unpublished
Staphylococcus aureus	USA300	Firmicutes Bacilli	2,872,769	2,560
Staphylococcus epidermidis	ATCC12228	Firmicutes Bacilli	2,499,279	2,419	Unpublished
Staphylococcus epidermidis	RP62A	Firmicutes Bacilli	2,616,530	2,494
Staphylococcus haemolyticus	JCSC1435	Firmicutes Bacilli	2,685,015	2,678
Staphylococcus saprophyticus	saprophyticus	Firmicutes Bacilli	2,516,575	2,446
Streptococcus agalactiae Streptococcus agalactiae Streptococcus agalactiae is a beta-hemolytic Gram-positive streptococcus.- Identification :The CAMP test is an important test for identification...	A909	Firmicutes Bacilli	2,127,839	1,996
Streptococcus agalactiae	NEM316	Firmicutes Bacilli	2,211,485	2,134
Streptococcus agalactiae	2603 V/R	Firmicutes Bacilli	2,160,267	2,124
Streptococcus mutans	UAB159	Firmicutes Bacilli	2,030,921	1,960
Streptococcus pneumoniae Streptococcus pneumoniae Streptococcus pneumoniae, or pneumococcus, is Gram-positive, alpha-hemolytic, aerotolerant anaerobic member of the genus Streptococcus. A significant human pathogenic bacterium, S...	R6	Firmicutes Bacilli	2,038,615	2,043
Streptococcus pneumoniae	TIGR4	Firmicutes Bacilli	2,160,842	2,125
Streptococcus pyogenes Streptococcus pyogenes Streptococcus pyogenes is a spherical, Gram-positive bacterium that is the cause of group A streptococcal infections. S. pyogenes displays streptococcal group A antigen on its cell wall. S...	M5Manfredo	Firmicutes Bacilli	1,841,271		Unpublished
Streptococcus pyogenes	MGAS10270	Firmicutes Bacilli	1,928,252	1,987
Streptococcus pyogenes	MGAS10394	Firmicutes Bacilli	1,899,877	1,886
Streptococcus pyogenes	MGAS10750	Firmicutes Bacilli	1,937,111	1,979
Streptococcus pyogenes	MGAS2096	Firmicutes Bacilli	1,860,355	1,898
Streptococcus pyogenes	MGAS315	Firmicutes Bacilli	1,900,521	1,865
Streptococcus pyogenes	MGAS5005	Firmicutes Bacilli	1,838,554	1,865
Streptococcus pyogenes	MGAS6180	Firmicutes Bacilli	1,897,573	1,894
Streptococcus pyogenes	MGAS8232	Firmicutes Bacilli	1,895,017	1,845
Streptococcus pyogenes	MGAS9429	Firmicutes Bacilli	1,836,467	1,877
Streptococcus pyogenes	SF370	Firmicutes Bacilli	1,852,441	1,696
Streptococcus pyogenes	SSI1	Firmicutes Bacilli	1,894,275	1,861
Streptococcus thermophilus	CNRZ1066	Firmicutes Bacilli	1,796,226	1,915
Streptococcus thermophilus	LMG18311	Firmicutes Bacilli	1,796,846	1,889
Streptomyces avermitilis	MA4680	Acidobacteria	9,025,608	7,577
Streptomyces coelicolor	A3	Acidobacteria	8,667,507	7,825
Symbiobacterium thermophilum	Strain	Acidobacteria	3,566,135	3,337
Synechococcus Synechococcus Synechococcus is a unicellular cyanobacterium that is very widespread in the marine environment. Its size varies from 0.8 µm to 1.5 µm... elongatus	PCC6301	Cyanobacteria Chroococcales	2,696,255	2,525	Unpublished
Synechococcus elongatus	PCC7942	Cyanobacteria Chroococcales	2,695,903	2,611	Unpublished
Synechococcus sp	WH8102	Cyanobacteria Chroococcales	2,434,428	2,526
Synechococcus species	CC9605	Cyanobacteria Chroococcales	2,510,659	2,638	Unpublished
Synechococcus species	CC9902	Cyanobacteria Chroococcales	2,234,828	2,304	Unpublished
Synechocystis species	PCC6803	Cyanobacteria Chroococcales	3,573,470	3,167
Syntrophus aciditrophicus	SB	Proteobacteria delta-epsilon	3,179,300	3,168	Unpublished
Thermoanaerobacter tengcongensis	MB4T	Firmicutes Clostridia	2,689,445	2,588	Unpublished
Thermobifida fusca	YX	Acidobacteria	3,642,249	3,110	Unpublished
Thermosynechococcus elongatus	bp1	Cyanobacteria Chroococcales	2,593,857	2,475	Unpublished
Thermotoga maritima	MSB8	Thermotogae Thermotogae Thermotogae is a phylum of the domain "Bacteria". This phylum comprises merely the class "Thermotogae", with the order "Thermotogales" and the family "Thermotogaceae"....	1,860,725	1,846
Thermus thermophilus	HB27	Deinococcus-Thermus Deinococci	1,894,877	1,982
Thermus thermophilus	HB8	Deinococcus-Thermus Deinococci	1,849,742	1,973	Unpublished
Thiobacillus denitrificans	ATCC25259	Proteobacteria Betaproteobacteria	2,909,809	2,827	Unpublished
Thiomicrospira crunogena	XCL2	Proteobacteria Gammaproteobacteria	2,427,734	2,192	Unpublished
Thiomicrospira denitrificans	ATCC33889	Proteobacteria delta-epsilon	2,201,561	2,097	Unpublished
Treponema denticola	ATCC35405	Spirochaetes	2,843,201	2,767
Treponema pallidum	Nichols	Spirochaetes	1,138,011	1,031
Tropheryma whippelii	TW0827	Acidobacteria	925,938	784	Unpublished
Tropheryma whippelii	Twist	Acidobacteria	927,303	808
Ureaplasma urealyticum	serovar3	Firmicutes Mollicutes	751,719	611
Vibrio cholerae Vibrio cholerae Vibrio cholerae is a Gram-negative, comma-shaped bacterium. Some strains of V. cholerae cause the disease cholera. V. cholerae is facultatively anaerobic and has a flagella at one cell pole. V...	N16961 (chromosome I)	Proteobacteria Gammaproteobacteria	2,961,149	2,736
	N16961 (chromosome II)	Proteobacteria Gammaproteobacteria	1,072,315	1,092
Vibrio Vibrio Vibrio is a genus of Gram-negative bacteria possessing a curved rod shape, several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in saltwater, Vibrio are facultative anaerobes that test positive for oxidase and do not form... fischeri	ES114 (chromosome I)	Proteobacteria Gammaproteobacteria	2,906,179	2,575
	ES114 (chromosome II)	Proteobacteria Gammaproteobacteria	1,332,022	1,172
Vibrio parahaemolyticus Vibrio parahaemolyticus Vibrio parahaemolyticus is a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater, which, when ingested, causes gastrointestinal illness in humans. V. parahaemolyticus is oxidase positive, facultatively aerobic, and does not form spores...	RIMD2210633 (chromosome I)	Proteobacteria Gammaproteobacteria	3,288,558	3,080
	RIMD2210633 (chromosome II)	Proteobacteria Gammaproteobacteria	1,877,212	1,752
Vibrio vulnificus Vibrio vulnificus Vibrio vulnificus is a species of Gram-negative, motile, curved, rod-shaped bacteria of the Vibrio Genus. It was first reported by Hollis et al. in 1976. It was subsequently given the name Beneckea vulnifica by Reichelt et al. in 1976 , and finally Vibrio vulnificus by Farmer in 1979...	CMCP6 (chromosome I)	Proteobacteria Gammaproteobacteria	3,281,944	2,973
	CMCP6 (chromosome II)	Proteobacteria Gammaproteobacteria	1,844,853	1,565
Vibrio vulnificus	YJ016 (chromosome I)	Proteobacteria Gammaproteobacteria	3,354,505	3,262
	YJ016 (chromosome II)	Proteobacteria Gammaproteobacteria	1,857,073	1,697
Wigglesworthia glossinidia	Strain	Proteobacteria Gammaproteobacteria	697,724	611
Wolbachia Wolbachia Wolbachia is a genus of bacteria which infects arthropod species, including a high proportion of insects , as well as some nematodes. It is one of the world's most common parasitic microbes and is possibly the most common reproductive parasite in the biosphere... endosymbiont	TRS	Proteobacteria Alphaproteobacteria	1,080,084	805
Wolbachia pipientis	wMel	Proteobacteria Alphaproteobacteria	1,267,782	1,195
Wolinella succino	DSMZ1740	Proteobacteria delta-epsilon	2,110,355	2,044
Xanthomonas axonopodis	citri306	Proteobacteria Gammaproteobacteria	5,175,554	4,312
Xanthomonas campestris Xanthomonas campestris Xanthomonas campestris is a bacterial species that causes a variety of plant diseases. Available from the NCPPB,and other international Culture collections such as ICMP, ATCC, and LMG in a purified form, it is used in the commercial production of a high-molecular-weight polysaccharide - xanthan...	8004	Proteobacteria Gammaproteobacteria	5,148,708	4,273
Xanthomonas campestris	8510	Proteobacteria Gammaproteobacteria	5,178,466	4,487
Xanthomonas campestris	ATCC33913	Proteobacteria Gammaproteobacteria	5,076,188	4,181
Xanthomonas oryzae Xanthomonas oryzae Xanthomonas oryzae is a species of proteobacteria. The major host of the bacteria is rice .The species contains two pathovars which are non-European: Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv...	KACC10331	Proteobacteria Gammaproteobacteria	4,941,439	4,637
Xanthomonas oryzae	MAFF311018	Proteobacteria Gammaproteobacteria	4,940,217	4,372	Unpublished
Xylella fastidiosa	9a5c	Proteobacteria Gammaproteobacteria	2,679,306	2,766
Xylella fastidiosa	Temecula1	Proteobacteria Gammaproteobacteria	2,519,802	2,034
Yersinia pestis Yersinia pestis Yersinia pestis is a Gram-negative rod-shaped bacterium. It is a facultative anaerobe that can infect humans and other animals....	Antiqua	Proteobacteria Gammaproteobacteria	4,702,289	4,167
Yersinia pestis	CO-92BiovarOrientalis	Proteobacteria Gammaproteobacteria	4,653,728	4,008
Yersinia pestis	KIM	Proteobacteria Gammaproteobacteria	4,600,755	4,090
Yersinia pestis	Mediaevalis	Proteobacteria Gammaproteobacteria	4,595,065	3,895
Yersinia pseudotuberculosis	IP32953	Proteobacteria Gammaproteobacteria	4,744,671	3,974
Zymomonas mobilis	ZM4	Proteobacteria Alphaproteobacteria	2,056,416	1,998

External links

Genome Atlas Database
SUPERFAMILY comparative genomics database Includes genomes of completely sequenced prokaryotes, and sophisticated datamining plus visualisation tools for analysis

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