Accessory pigment
Encyclopedia
Accessory pigments are light-absorbing
compounds, found in photosynthetic organism
s, that work in conjunction with chlorophyll a
. They include other forms of this pigment, such as chlorophyll b in green algal and higher plant antennae, while other algae may contain chlorophyll c or d. In addition, there are many non-chlorophyll accessory pigments, such as carotenoid
s or phycobiliprotein
s, which also absorb light and transfer that light energy
to photosystem
chlorophyll. Some of these accessory pigments, in particular the carotenoids, also serve to absorb and dissipate excess light energy, or work as antioxidants. The large, physically associated group of chlorophylls and other accessory pigments is sometimes referred to as a pigment bed, though this term is no longer supported by what we know of photosystem and antenna complex structures.
The different chlorophyll and non-chlorophyll pigments associated with the photosystems all have different absorption spectra, either because the spectra of the different chlorophyll pigments are modified by their local protein environment or because the accessory pigments have intrinsic structural differences. The result is that, in vivo
, a composite absorption spectrum of all these pigments is broadened and flattened such that a wider range of visible and infrared
radiation is absorbed by plants and algae. Most photosynthetic organisms do not absorb green light well, thus most remaining light under leaf canopies in forests or under water with abundant plankton is green, a spectral effect called the "green window". Organisms such as some cyanobacteria and red algae
contain accessory phycobiliprotein
s that absorb green light reaching these habitats.
In aquatic ecosystem
s, it is likely that the absorption spectrum of water, along with gilvin and tripton (dissolved
and particulate organic matter
, respectively), determines phototroph
ic niche differentiation
. The six shoulders in the light absorption of water between wavelength
s 400 and 1100 nm correspond to troughs in the collective absorption of at least twenty diverse species of phototrophic bacteria. Another effect is due to the overall trend for water to absorb low frequencies, while gilvin and tripton absorb higher ones. This is why open ocean appears blue and supports yellow species such as Prochlorococcus
, which contains divinyl-chlrophyll a and b. Synechococcus
, colored red with phycoerythrin
, is adapted to coastal bodies, while red-absorbing phycocyanin
allows Cyanobacteria to thrive in darker inland waters.
Pigment
A pigment is a material that changes the color of reflected or transmitted light as the result of wavelength-selective absorption. This physical process differs from fluorescence, phosphorescence, and other forms of luminescence, in which a material emits light.Many materials selectively absorb...
compounds, found in photosynthetic organism
Organism
In biology, an organism is any contiguous living system . In at least some form, all organisms are capable of response to stimuli, reproduction, growth and development, and maintenance of homoeostasis as a stable whole.An organism may either be unicellular or, as in the case of humans, comprise...
s, that work in conjunction with chlorophyll a
Chlorophyll a
Chlorophyll a is a specific form of chlorophyll used in oxygenic photosynthesis. It absorbs most energy from wavelengths of violet-blue and orange-red light. This photosynthetic pigment is essential for photosynthesis in eukaryotes, cyanobacteria and prochlorophytes because of its role as primary...
. They include other forms of this pigment, such as chlorophyll b in green algal and higher plant antennae, while other algae may contain chlorophyll c or d. In addition, there are many non-chlorophyll accessory pigments, such as carotenoid
Carotenoid
Carotenoids are tetraterpenoid organic pigments that are naturally occurring in the chloroplasts and chromoplasts of plants and some other photosynthetic organisms like algae, some bacteria, and some types of fungus. Carotenoids can be synthesized fats and other basic organic metabolic building...
s or phycobiliprotein
Phycobiliprotein
Phycobiliproteins are water-soluble proteins present in cyanobacteria and certain algae that capture light energy, which is then passed on to chlorophylls during photosynthesis. Phycobiliproteins are formed of a complex between proteins and covalently bound phycobilins that act as chromophores...
s, which also absorb light and transfer that light energy
Energy
In physics, energy is an indirectly observed quantity. It is often understood as the ability a physical system has to do work on other physical systems...
to photosystem
Photosystem
Photosystems are functional and structural units of protein complexes involved in photosynthesis that together carry out the primary photochemistry of photosynthesis: the absorption of light and the transfer of energy and electrons...
chlorophyll. Some of these accessory pigments, in particular the carotenoids, also serve to absorb and dissipate excess light energy, or work as antioxidants. The large, physically associated group of chlorophylls and other accessory pigments is sometimes referred to as a pigment bed, though this term is no longer supported by what we know of photosystem and antenna complex structures.
The different chlorophyll and non-chlorophyll pigments associated with the photosystems all have different absorption spectra, either because the spectra of the different chlorophyll pigments are modified by their local protein environment or because the accessory pigments have intrinsic structural differences. The result is that, in vivo
In vivo
In vivo is experimentation using a whole, living organism as opposed to a partial or dead organism, or an in vitro controlled environment. Animal testing and clinical trials are two forms of in vivo research...
, a composite absorption spectrum of all these pigments is broadened and flattened such that a wider range of visible and infrared
Infrared
Infrared light is electromagnetic radiation with a wavelength longer than that of visible light, measured from the nominal edge of visible red light at 0.74 micrometres , and extending conventionally to 300 µm...
radiation is absorbed by plants and algae. Most photosynthetic organisms do not absorb green light well, thus most remaining light under leaf canopies in forests or under water with abundant plankton is green, a spectral effect called the "green window". Organisms such as some cyanobacteria and red algae
Red algae
The red algae are one of the oldest groups of eukaryotic algae, and also one of the largest, with about 5,000–6,000 species of mostly multicellular, marine algae, including many notable seaweeds...
contain accessory phycobiliprotein
Phycobiliprotein
Phycobiliproteins are water-soluble proteins present in cyanobacteria and certain algae that capture light energy, which is then passed on to chlorophylls during photosynthesis. Phycobiliproteins are formed of a complex between proteins and covalently bound phycobilins that act as chromophores...
s that absorb green light reaching these habitats.
In aquatic ecosystem
Aquatic ecosystem
An aquatic ecosystem is an ecosystem in a body of water. Communities of organisms that are dependent on each other and on their environment live in aquatic ecosystems. The two main types of aquatic ecosystems are marine ecosystems and freshwater ecosystems....
s, it is likely that the absorption spectrum of water, along with gilvin and tripton (dissolved
Solvation
Solvation, also sometimes called dissolution, is the process of attraction and association of molecules of a solvent with molecules or ions of a solute...
and particulate organic matter
Organic matter
Organic matter is matter that has come from a once-living organism; is capable of decay, or the product of decay; or is composed of organic compounds...
, respectively), determines phototroph
Phototroph
Phototrophs are the organisms that carry out photosynthesis to acquire energy. They use the energy from sunlight to convert carbon dioxide and water into organic material to be utilized in cellular functions such as biosynthesis and respiration.Most phototrophs are autotrophs, also known as...
ic niche differentiation
Niche differentiation
The term niche differentiation , as it applies to the field of ecology, refers to the process by which natural selection drives competing species into different patterns of resource use or different niches...
. The six shoulders in the light absorption of water between wavelength
Wavelength
In physics, the wavelength of a sinusoidal wave is the spatial period of the wave—the distance over which the wave's shape repeats.It is usually determined by considering the distance between consecutive corresponding points of the same phase, such as crests, troughs, or zero crossings, and is a...
s 400 and 1100 nm correspond to troughs in the collective absorption of at least twenty diverse species of phototrophic bacteria. Another effect is due to the overall trend for water to absorb low frequencies, while gilvin and tripton absorb higher ones. This is why open ocean appears blue and supports yellow species such as Prochlorococcus
Prochlorococcus
Prochlorococcus is a genus of very small marine cyanobacteria with an unusual pigmentation . These bacteria belong to the photosynthetic picoplankton and are probably the most abundant photosynthetic organism on Earth....
, which contains divinyl-chlrophyll a and b. Synechococcus
Synechococcus
Synechococcus is a unicellular cyanobacterium that is very widespread in the marine environment. Its size varies from 0.8 µm to 1.5 µm...
, colored red with phycoerythrin
Phycoerythrin
Phycoerythrin is a red protein from the light-harvesting phycobiliprotein family, present in cyanobacteria, red algae and cryptomonads.Like all phycobiliproteins, phycoerythrin is composed of a protein part, organised in a hexameric structure of alpha and beta chains, covalently binding...
, is adapted to coastal bodies, while red-absorbing phycocyanin
Phycocyanin
Phycocyanin is a pigment from the light-harvesting phycobiliprotein family, along with allophycocyanin and phycoerythrin. It is an accessory pigment to chlorophyll. All phycobiliproteins are water-soluble and therefore cannot exist within the membrane as do carotenoids, but aggregate forming...
allows Cyanobacteria to thrive in darker inland waters.