Tetrahydrofolate riboswitch
Encyclopedia
Tetrahydrofolate riboswitches are a class of homologous
RNA
s in certain bacteria
that bind tetrahydrofolate (THF). It is almost exclusively located in the probable 5' untranslated regions of protein
-coding gene
s, and most of these genes are known to encode either folate transporters or enzyme
s involved in folate metabolism
. For these reasons it was inferred that the RNAs function as riboswitch
es. THF riboswitches are found in a variety of Firmicutes, specifically the orders
Clostridiales and Lactobacillales
, and more rarely in other lineages of bacteria. The THF riboswitch was one of many conserved RNA structures found in a project based on comparative genomics.
Homology (biology)
Homology forms the basis of organization for comparative biology. In 1843, Richard Owen defined homology as "the same organ in different animals under every variety of form and function". Organs as different as a bat's wing, a seal's flipper, a cat's paw and a human hand have a common underlying...
RNA
RNA
Ribonucleic acid , or RNA, is one of the three major macromolecules that are essential for all known forms of life....
s in certain bacteria
Bacteria
Bacteria are a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals...
that bind tetrahydrofolate (THF). It is almost exclusively located in the probable 5' untranslated regions of protein
Protein
Proteins are biochemical compounds consisting of one or more polypeptides typically folded into a globular or fibrous form, facilitating a biological function. A polypeptide is a single linear polymer chain of amino acids bonded together by peptide bonds between the carboxyl and amino groups of...
-coding gene
Gene
A gene is a molecular unit of heredity of a living organism. It is a name given to some stretches of DNA and RNA that code for a type of protein or for an RNA chain that has a function in the organism. Living beings depend on genes, as they specify all proteins and functional RNA chains...
s, and most of these genes are known to encode either folate transporters or enzyme
Enzyme
Enzymes are proteins that catalyze chemical reactions. In enzymatic reactions, the molecules at the beginning of the process, called substrates, are converted into different molecules, called products. Almost all chemical reactions in a biological cell need enzymes in order to occur at rates...
s involved in folate metabolism
Metabolism
Metabolism is the set of chemical reactions that happen in the cells of living organisms to sustain life. These processes allow organisms to grow and reproduce, maintain their structures, and respond to their environments. Metabolism is usually divided into two categories...
. For these reasons it was inferred that the RNAs function as riboswitch
Riboswitch
In molecular biology, a riboswitch is a part of an mRNA molecule that can directly bind a small target molecule, and whose binding of the target affects the gene's activity. Thus, an mRNA that contains a riboswitch is directly involved in regulating its own activity, in response to the...
es. THF riboswitches are found in a variety of Firmicutes, specifically the orders
Order (biology)
In scientific classification used in biology, the order is# a taxonomic rank used in the classification of organisms. Other well-known ranks are life, domain, kingdom, phylum, class, family, genus, and species, with order fitting in between class and family...
Clostridiales and Lactobacillales
Lactobacillales
The Lactobacillales are an order of Gram-positive bacteria that comprise the lactic acid bacteria. They are widespread in nature, and are found in soil, water, plants and animals. They are widely used in the production of fermented foods, including dairy products such as yogurt, cheese, butter,...
, and more rarely in other lineages of bacteria. The THF riboswitch was one of many conserved RNA structures found in a project based on comparative genomics.