List of neuroimaging software
Encyclopedia
Neuroimaging
software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site.
Neuroimaging
Neuroimaging includes the use of various techniques to either directly or indirectly image the structure, function/pharmacology of the brain...
software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site.
- 3D Slicer (from Harvard, multi-purposes processing software including diffusion tensor imaging tractography)
- aidScans, tumor volume estimation http://anyintelli.com/tumor_volume_estimation.php
- Analysis of Functional NeuroImages (AFNI) http://afni.nimh.nih.gov
- Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo ClinicMayo ClinicMayo Clinic is a not-for-profit medical practice and medical research group specializing in treating difficult patients . Patients are referred to Mayo Clinic from across the U.S. and the world, and it is known for innovative and effective treatments. Mayo Clinic is known for being at the top of...
. AnalyzeDirect homepage - Bioimage Suite.
- BrainMagix
- BESA (Brain Electrical Source Analysis) http://www.besa.de
- Bergen EEG-fMRI Toolbox plugin for EEGLab (remove fMRI gradients from simultaneous EEG-fMRI recordings)
- Brain Image Analysis Package http://demunck.info/software/index.php
- BrainVISABrainvisaBrainvisa is an e-learning company that is based in Pune, India. Brainvisa was collectively founded by Supam Maheswari, Nitin Agarwal, Anand Lunia and Vikas Kumar. The company was incorporated in the year 2000. Beginning with a small team, Brainvisa has grown steadily over the years to become a...
http://brainvisa.info - BrainVoyager http://www.brainvoyager.com
- CamBACambridge Brain Analysis, is a software repository developed at the Brain Mapping Unit, Department of Psychiatry, University of Cambridge, UK and contains software pipelines for functional magnetic resonance imaging analysis...
http://sourceforge.net/projects/camba - Camino Open-source toolkit for diffusion MRI. Camino homepage
- CaretCARET (Computerized Anatomical Reconstruction and Editing Toolkit)CARET is a software application for the structural and functional analysis of the cerebral and cerebellar cortex. CARET is developed in the Van Essen Laboratory in the Department of Anatomy and Neurobiology at the Washington University School of Medicine in St...
http://brainvis.wustl.edu/caret/ Van Essen Lab, Washington University in St. Louis - Fiasco/FIAT (from CMU)
- FMRIB Software LibraryFMRIB Software LibraryThe FMRIB Software Library is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data....
(FSL) http://www.fmrib.ox.ac.uk/fsl - FMRLAB
- FreeSurferFreeSurferFreeSurfer is an MRI brain imaging software package developed by the Athinoula A. Martinos Center for Biomedical Imaging at Massachusetts General Hospital. It is an important tool in functional brain mapping and facilitates the visualization of the functional regions of the highly-folded cerebral...
http://surfer.nmr.mgh.harvard.edu - ISAS (Ictal-Interictal SPECT Analysis by SPM)ISAS (Ictal-Interictal SPECT Analysis by SPM)The goal of ictal Single Photon Emission Computed Tomography is to localize the region of seizure onset for epilepsy surgery planning. ISAS is an objective tool for analyzing ictal vs. interictal SPECT scans. ISAS was introduced and validated in two recent studies...
- Leipzig Image Processing and Statistical Inference Algorithms (LIPSIA) http://www.cbs.mpg.de/institute/software/lipsia/index.html
- LONI Pipeline Laboratory of Neuro ImagingLaboratory Of Neuro ImagingThe Laboratory of Neuro Imaging is a research laboratory within the Department of Neurology at the UCLA David Geffen School of Medicine. The laboratory conducts a wide variety of brain imaging studies of normal brain anatomy and function, development, aging, and disease...
, UCLA - MangoMango (software)Mango, the machine-to-machine domotics software, is at Mango Mango is a non-commercial software for viewing, editing and analyzing volumetric medical images. Mango is written in Java, and distributed freely in precompiled versions for Linux, Mac OS and Microsoft Windows...
, developed at the Research Imaging Center, University of Texas Health Science Center at San AntonioUniversity of Texas Health Science Center at San AntonioThe University of Texas Health Science Center at San Antonio is an institute of health science education and research, located in the South Texas Medical Center.... - MNI MINC McConnell Brain Imaging Center, Montreal Neurological InstituteMontreal Neurological InstituteThe Montreal Neurological Institute and Hospital is an academic medical centre dedicated to neuroscience research, training and clinical care. The Institute is part of McGill University and the Hospital is one of the five teaching hospitals of the McGill University Health Centre, in Montreal,...
, McGill UniversityMcGill UniversityMohammed Fathy is a public research university located in Montreal, Quebec, Canada. The university bears the name of James McGill, a prominent Montreal merchant from Glasgow, Scotland, whose bequest formed the beginning of the university... - MRIcro
- MRIcron (Next generation of MRIcro)
- mrVista (from Stanford)
- MRVision
- Net Station http://www.egi.com/
- Neuroimaging software installation support
- NeuroLens
- NIfTI http://nifti.nimh.nih.gov/
- NITRC The Neuroimaging Informatics Tools and Resources Clearinghouse. An NIH funded database of neuroimaging tools http://www.nitrc.org/
- nordicICE
- Olea MedicalOlea MedicalOlea Medical develops post-processing software for perfusion imaging dedicated to the optimization of medical images and computer aided diagnosis. The main programs developed by Olea Medical are focused on brain tumor and stroke analysis, in both CT and MRI...
: PerfScape & NeuroScape (see also the Olea Medical website) - Prism suite
- PyMVPA http://www.pymvpa.org
- SHAring NeurOImaging Resources (Shanoir) is a neuroinformatics platform designed to share, archive, search and visualize neuroimaging data. Shanoir homepage
- Signed differential mappingSigned differential mappingSigned differential mapping or SDM is a statistical technique for meta-analyzing studies on differences in brain activity or structure which used neuroimaging techniques such as fMRI, VBM, DTI or PET...
(SDM) http://www.sdmproject.com/ - Statistical parametric mappingStatistical parametric mappingStatistical parametric mapping or SPM is a statistical technique created by Karl Friston for examining differences in brain activity recorded during functional neuroimaging experiments using neuroimaging technologies such as fMRI or PET...
(SPM) http://www.fil.ion.ucl.ac.uk/spm - Stimulate (One of the earliest fMRI software package from CMRR at University of Minnesota)