Trans-Proteomic Pipeline
Encyclopedia
The Trans-Proteomic Pipeline (TPP) is a widely-used freely available open source
proteomics
data analysis pipeline developed at the Institute for Systems Biology
(ISB) by the Ruedi Aebersold
group under the Seattle Proteome Center. The TPP includes PeptideProphet, ProteinProphet, ASAPRatio, XPRESS and Libra.
Please see the TPP Wiki for the most up-to-date information, including download information.
The TPP is directly available from the Sashimi project. TPP components are also included in other commercial and non-commercial systems, including:
Open source
The term open source describes practices in production and development that promote access to the end product's source materials. Some consider open source a philosophy, others consider it a pragmatic methodology...
proteomics
Proteomics
Proteomics is the large-scale study of proteins, particularly their structures and functions. Proteins are vital parts of living organisms, as they are the main components of the physiological metabolic pathways of cells. The term "proteomics" was first coined in 1997 to make an analogy with...
data analysis pipeline developed at the Institute for Systems Biology
Institute for Systems Biology
The Institute for Systems Biology is a non-profit research institution, located in Seattle, Washington, United States. Leroy Hood co-founded the Institute with Alan Aderem and Ruedi Aebersold in 2000....
(ISB) by the Ruedi Aebersold
Ruedi Aebersold
Rudolf Aebersold is a Swiss biologist, regarded as a pioneer in the fields of proteomics and systems biology. Prof. Aebersold has primarily researched techniques for measuring proteins in complex samples, in many cases via mass spectrometry...
group under the Seattle Proteome Center. The TPP includes PeptideProphet, ProteinProphet, ASAPRatio, XPRESS and Libra.
Please see the TPP Wiki for the most up-to-date information, including download information.
The TPP is directly available from the Sashimi project. TPP components are also included in other commercial and non-commercial systems, including:
- LabKey ServerLabKey ServerLabKey Server is free, open source software available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data repository that allows web-based querying, reporting, and collaborating across a range of data sources...
http://www.labkey.org/ - Insilicos Proteomics Pipeline http://www.insilicos.com/IPP
- Proteus http://www.genologics.com/solutions/research-informatics/proteus