List of web resources for visualizing molecular dynamics
Encyclopedia
| Name | License | Citation | Comments |
|---|---|---|---|
| ANM | free | computes and visualizes normal modes | |
| Ascalaph Graphics | free | visualizes MDynaMix MDynaMix MDynaMixis a general purpose molecular dynamics software package for simulations mixtures of molecules,interacting by AMBER/CHARMM like force fields in a periodic boundary conditions.... simulations |
|
| Database of Macromolecular Movements | free | analyzes protein hinge motions | |
| DSMM | free | movies of MD simulations | |
| Dynameomics | free | interactive visualization of MD trajectories | |
| FIRST/FRODA | free | uses constraints to generate conformational ensembles and trajectories | |
| Force Field Explorer | free | graphical interface to TINKER TINKER TINKER is a computer software application for molecular dynamics simulation with a complete and general package for molecular mechanics and molecular dynamics, with some special features for biopolymers... |
|
| MoDEL | free | deposit and access MD trajectories | |
| Moviemaker | free | generates animations of protein motions | |
| NOMAD-ref | free | compute and visualizes normal modes | |
| Yale Morph Server | free | animations transitions between two states | |
See also
- Molecular dynamicsMolecular dynamicsMolecular dynamics is a computer simulation of physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a period of time, giving a view of the motion of the atoms...
- Molecular graphicsMolecular graphicsMolecular graphics is the discipline and philosophy of studying molecules and their properties through graphical representation. IUPAC limits the definition to representations on a "graphical display device"...
- List of molecular graphics systems
- Protein dynamics