I have a short peptide of about 30 amino acids that I would like to BLAST against protein databases, pentapeptide by pentapeptide (or hexapeptide, heptapeptide etc) to look for matching sets. Other than doing this by hand, is there a...

Sequence alignment

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Chriscar

I have a short peptide of about 30 amino acids that I would like to BLAST against protein databases, pentapeptide by pentapeptide (or hexapeptide, heptapeptide etc) to look for matching sets. Other than doing this by hand, is there a BLAST setting for doing this ?

Thanks for your help

Chris

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replied to: Chriscar

Theman

Replied to: I have a short peptide of about 30 amino acids that...

To many big words

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